1G4G
NMR STRUCTURE OF THE FIFTH DOMAIN OF HUMAN BETA2-GLYCOPROTEIN I
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1mM beta2-glycoprotein I domain V U-15N; 20mM Na-phosphate buffer, pH 6.0; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.12 | 6.0 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | 1mM beta2-glycoprotein I domain V U-15N,13C; 20mM Na-phosphate buffer, pD 6.0; 100% D2O | 100% D2O | 0.12 | 6.0 | ambient | 298 | |
3 | HNCO-TROSY | 1mM beta2-glycoprotein I domain V U-15N; 20mM Na-phosphate buffer, pH 6.0; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.12 | 6.0 | ambient | 298 | |
4 | HMQC-J | 1mM beta2-glycoprotein I domain V U-15N; 20mM Na-phosphate buffer, pH 6.0; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.12 | 6.0 | ambient | 298 | |
5 | HNHB | 1mM beta2-glycoprotein I domain V U-15N; 20mM Na-phosphate buffer, pH 6.0; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.12 | 6.0 | ambient | 298 | |
6 | HN(CO)HB | 1mM beta2-glycoprotein I domain V U-15N; 20mM Na-phosphate buffer, pH 6.0; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.12 | 6.0 | ambient | 298 | |
7 | N15-TOCSY | 1mM beta2-glycoprotein I domain V U-15N; 20mM Na-phosphate buffer, pH 6.0; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.12 | 6.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DMX | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | the structures are based on a total of 1402 restraints, 1288 are NOE-derived distance constraints, 88 dihedral angle restraints, 26 distance restraints from hydrogen bonds | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | |
Conformers Calculated Total Number | |
Conformers Submitted Total Number | 1 |
Representative Model | (minimized average structure) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | 3.841 | Brunger |
2 | refinement | X-PLOR | 3.841 | Brunger |