1J1H
Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 2mM SmpB U-15N; 1mM HCl and 100mM NaCl | 95% H2O/5% D2O | 100 mM | 3.6 | ambient | 318 | |
2 | 3D_13C-separated_NOESY | 0.6mM SmpB U-15N,13C; 1mM HCl and 100mM NaCl | 95% H2O/5% D2O | 100 mM | 3.6 | ambient | 318 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Varian | INOVA | 600 |
3 | Varian | INOVA | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | on the basis of agreement with the experimental data and van der Waals energy |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 11 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | 3.1 | Brunger |
2 | refinement | X-PLOR | 3.1 | Brunger |