1J2U

Creatininase Zn


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52931.5M Li sulfate, 0.1M Na HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.7767.42

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.114α = 90
b = 151.449β = 90
c = 167.633γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-11-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-6B1.000Photon FactoryBL-6B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.854098.90.04710.74.821813326.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.8599.70.3354

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIOND-FourierTHROUGHOUT1.85402070211094198.650.187070.186310.20131RANDOM25.062
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.081.17-2.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg17.573
r_dihedral_angle_1_deg4.003
r_scangle_it2.841
r_scbond_it1.721
r_angle_refined_deg1.246
r_mcangle_it1.179
r_angle_other_deg0.707
r_mcbond_it0.638
r_symmetry_vdw_refined0.365
r_xyhbond_nbd_other0.289
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg17.573
r_dihedral_angle_1_deg4.003
r_scangle_it2.841
r_scbond_it1.721
r_angle_refined_deg1.246
r_mcangle_it1.179
r_angle_other_deg0.707
r_mcbond_it0.638
r_symmetry_vdw_refined0.365
r_xyhbond_nbd_other0.289
r_symmetry_vdw_other0.273
r_nbd_refined0.222
r_nbd_other0.199
r_symmetry_hbond_refined0.173
r_xyhbond_nbd_refined0.165
r_chiral_restr0.074
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbtor_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11928
Nucleic Acid Atoms
Solvent Atoms1315
Heterogen Atoms62

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling