1K99
Solution Structure of the first HMG box in human Upstream binding factor
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 3mM hUBF HMG box1 U-15N,13C; 10mM NaPO4 buffer pH5.5; 90% H2O, 10%D2O | 90% H2O/10% D2O | 10mM | 5.5 | ambient | 300 | |
2 | 3D_15N-separated_NOESY | 3mM hUBF HMG box1 U-15N,13C; 10mM NaPO4 buffer pH5.5; 90% H2O, 10%D2O | 90% H2O/10% D2O | 10mM | 5.5 | ambient | 300 | |
3 | 2D NOESY | 3mM hUBF HMG box1 U-15N; 10mM NaPO4 buffer pH5.5; 100% D2O | 100% D2O | 10mM | 5.5 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing; torsion angle dynamics | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations, structures with the lowest energy |
Conformers Calculated Total Number | 60 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.0 | Brunger, A.T. |
2 | collection | XwinNMR | 1.3 | Bruker |
3 | processing | NMRPipe | Delaglio, F. et al. | |
4 | data analysis | PIPP | Garrett, D. et al. |