1KUV
X-ray Crystallographic Studies of Serotonin N-acetyltransferase Catalysis and Inhibition
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | PEG 2000, MPD, ammonium sulfate, MES pH 6.5, magnesium acetate, DTT, spermidine, and lithium chloride. VAPOR DIFFUSION, HANGING DROP at 277K, temperature 277.0K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
1.78 | 30.81 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 53.313 | α = 90 |
b = 68.716 | β = 90 |
c = 89.725 | γ = 90 |
Symmetry | |
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Space Group | C 2 2 21 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | BRANDEIS - B4 | 1999-03-23 | M | MAD | ||||||
2 | 1 | x-ray | CCD | ADSC QUANTUM 4 | 1999-01-06 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | NSLS BEAMLINE X25 | 0.97946, 0.97927, 0.92011, 0.91970 | NSLS | X25 |
2 | SYNCHROTRON | CHESS BEAMLINE F1 | 0.9100 | CHESS | F1 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||
1,2 | 2 | 25 | 91.5 | 0.089 | 0.089 | 16.3 | 8.3 | 11494 | 10517 | -3 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | R-Sym I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | ||||||||||
2 | 2.07 | 79.5 | 0.123 | 0.123 | 9.6 | 5 | 1148 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work (Depositor) | R-Free (Depositor) | R-Free Selection Details | Mean Isotropic B | |||||
X-RAY DIFFRACTION | MAD | THROUGHOUT | 2 | 25 | 11474 | 10402 | 1055 | 90.7 | 0.226 | 0.226 | 0.203 | 0.25 | RANDOM |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[2][2] | Anisotropic B[3][3] | ||||
6.943 | -13.236 | 6.293 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
c_scangle_it | 2.95 |
c_scbond_it | 1.94 |
c_mcangle_it | 1.89 |
c_angle_deg | 1.3 |
c_mcbond_it | 1.27 |
c_bond_d | 0.007 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 1312 |
Nucleic Acid Atoms | |
Solvent Atoms | 167 |
Heterogen Atoms | 129 |
Software
Software | |
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Software Name | Purpose |
SnB | phasing |
MLPHARE | phasing |
DM | model building |
CNS | refinement |
MARMAD | data reduction |
DENZO | data reduction |
SCALEPACK | data scaling |
DM | phasing |