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FULL-LENGTH ARF1-GDP-MG IN COMPLEX WITH BREFELDIN A AND A SEC7 DOMAIN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 19% Peg 3350, 175mM NH4 Fluoride, 100mM cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.54 51.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.081 α = 90 b = 109.773 β = 90 c = 118.326 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 25 0.087 18.6 11.77 74905 27.28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.86 1.88 83.6 0.424 3.1 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.86 29.88 74905 71213 3692 98.29 0.18111 0.17904 0.1889 0.22045 0.2245 RANDOM 24.191
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 -0.59 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.391 r_scangle_it 5.667 r_scbond_it 3.539 r_mcangle_it 2.483 r_angle_refined_deg 1.971 r_mcbond_it 1.409 r_angle_other_deg 0.994 r_symmetry_vdw_other 0.292 r_nbd_other 0.26 r_symmetry_hbond_refined 0.251
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.391 r_scangle_it 5.667 r_scbond_it 3.539 r_mcangle_it 2.483 r_angle_refined_deg 1.971 r_mcbond_it 1.409 r_angle_other_deg 0.994 r_symmetry_vdw_other 0.292 r_nbd_other 0.26 r_symmetry_hbond_refined 0.251 r_nbd_refined 0.231 r_metal_ion_refined 0.201 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.135 r_nbtor_other 0.09 r_bond_refined_d 0.026 r_gen_planes_refined 0.012 r_gen_planes_other 0.011 r_bond_other_d 0.004 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6011 Nucleic Acid Atoms Solvent Atoms 345 Heterogen Atoms 107
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling CCP4 phasing