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Thyroxine-Thyroid Hormone Receptor Interactions
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other TRb-TRIAC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 279 sodium acetate, cacodylate, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 279K
Crystal Properties Matthews coefficient Solvent content 3.24 61.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.79 α = 90 b = 68.79 β = 90 c = 130.4 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.09720 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 99 71.6 0.09 11829 11829 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 4.2 34
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT TRb-TRIAC 3.1 59.76 6873 6873 736 99.72 0.225 0.225 0.22 0.2058 0.266 0.25 RANDOM 51.998
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.74 0.87 1.74 -2.62
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.992 r_dihedral_angle_1_deg 6.93 r_scbond_it 4.324 r_mcangle_it 2.952 r_angle_refined_deg 2.78 r_angle_other_deg 2.112 r_mcbond_it 1.582 r_symmetry_vdw_refined 0.623 r_symmetry_vdw_other 0.32 r_nbd_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.992 r_dihedral_angle_1_deg 6.93 r_scbond_it 4.324 r_mcangle_it 2.952 r_angle_refined_deg 2.78 r_angle_other_deg 2.112 r_mcbond_it 1.582 r_symmetry_vdw_refined 0.623 r_symmetry_vdw_other 0.32 r_nbd_refined 0.294 r_nbd_other 0.272 r_xyhbond_nbd_refined 0.202 r_chiral_restr 0.161 r_nbtor_other 0.109 r_bond_refined_d 0.04 r_gen_planes_refined 0.015 r_gen_planes_other 0.015 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1934 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms 30
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement EPMR phasing