☰ Navigation Tabs
Crystal structure of a pyrroline-5-carboxylate reductase from neisseria meningitides mc58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 290 AMMONIUM SULFATE, HEPES, PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.6 51.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.526 α = 90 b = 49.845 β = 90 c = 65.534 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2004-07-23 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97984, 0.97970 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 50 69 0.102 24.66 9.5 38574 26616
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.67 0.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 50 22585 22303 1205 98.75 0.19727 0.19727 0.19495 0.1931 0.24059 0.2377 RANDOM 32.446
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.03 -0.36 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.068 r_dihedral_angle_4_deg 20.031 r_dihedral_angle_3_deg 16.056 r_dihedral_angle_1_deg 5.567 r_scangle_it 5.276 r_scbond_it 3.881 r_mcangle_it 1.584 r_angle_refined_deg 1.516 r_mcbond_it 1.092 r_symmetry_hbond_refined 0.337
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.068 r_dihedral_angle_4_deg 20.031 r_dihedral_angle_3_deg 16.056 r_dihedral_angle_1_deg 5.567 r_scangle_it 5.276 r_scbond_it 3.881 r_mcangle_it 1.584 r_angle_refined_deg 1.516 r_mcbond_it 1.092 r_symmetry_hbond_refined 0.337 r_nbtor_refined 0.298 r_nbd_refined 0.241 r_symmetry_vdw_refined 0.238 r_xyhbond_nbd_refined 0.206 r_chiral_restr 0.109 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1980 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling HKL-3000 phasing