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Catalytic and ubiqutin-associated domains of MARK2/PAR-1: T208A/S212A inactive double mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Y8G PDB ENTRY 1Y8G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 PEG 3350, Ammonium Sulphate, BIS-TRIS, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.9 57.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.302 α = 90 b = 119.302 β = 90 c = 105.694 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.8043 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.802 73.88 99.9 0.102 17.1 21073 21073
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.802 2.85 100 2.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Y8G 2.802 73.88 21073 21073 1092 99.95 0.20619 0.20619 0.20321 0.26243 0.2437 RANDOM 46.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 0.13 0.25 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.557 r_dihedral_angle_4_deg 21.263 r_dihedral_angle_3_deg 20.85 r_dihedral_angle_1_deg 6.669 r_scangle_it 3.856 r_scbond_it 2.474 r_angle_refined_deg 1.93 r_mcangle_it 1.532 r_mcbond_it 0.949 r_nbtor_refined 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.557 r_dihedral_angle_4_deg 21.263 r_dihedral_angle_3_deg 20.85 r_dihedral_angle_1_deg 6.669 r_scangle_it 3.856 r_scbond_it 2.474 r_angle_refined_deg 1.93 r_mcangle_it 1.532 r_mcbond_it 0.949 r_nbtor_refined 0.33 r_nbd_refined 0.245 r_symmetry_vdw_refined 0.16 r_xyhbond_nbd_refined 0.138 r_symmetry_hbond_refined 0.136 r_chiral_restr 0.121 r_bond_refined_d 0.021 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4885 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement