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Crystal Structures of 1-Pyrroline-5-Carboxylate Reductase from Human Pathogen Streptococcus pyogenes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 3.5 M sodium formate , pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.88 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 171.631 α = 90 b = 109.646 β = 96.08 c = 84.033 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2005-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9795 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50 98.98 0.067 23.1 83861 83006 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.21 92 0.323
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 2.15 50 83006 78851 4155 99.03 0.1751 0.1751 0.1733 0.1776 0.20965 0.2068 RANDOM 46.675
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.67 1.03 -0.39 -3.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.11 r_dihedral_angle_4_deg 19.106 r_dihedral_angle_3_deg 16.509 r_dihedral_angle_1_deg 5.613 r_scangle_it 3.113 r_scbond_it 1.873 r_angle_refined_deg 1.355 r_mcangle_it 1.086 r_mcbond_it 0.573 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.11 r_dihedral_angle_4_deg 19.106 r_dihedral_angle_3_deg 16.509 r_dihedral_angle_1_deg 5.613 r_scangle_it 3.113 r_scbond_it 1.873 r_angle_refined_deg 1.355 r_mcangle_it 1.086 r_mcbond_it 0.573 r_nbtor_refined 0.299 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9619 Nucleic Acid Atoms Solvent Atoms 668 Heterogen Atoms 260
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data scaling SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing MLPHARE phasing DM phasing O model building Coot model building CCP4 phasing