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Carboxysome protein CsoS1A from Halothiobacillus neapolitanus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A10 PDB ENTRY 2A10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 293 30% PEG 400, 0.1M 2(cyclohexylamino)ethanosulfonic acid, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.85 33.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.417 α = 90 b = 66.417 β = 90 c = 28.982 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.00000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 90 94.1 0.072 8.8 13685 13685 24.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 71.8 0.395 5.2 1025
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2A10 1.4 57.54 12339 12339 625 84.86 0.187 0.187 0.185 0.1944 0.24 0.2467 RANDOM 28.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.58 -1.29 -2.58 3.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.458 r_dihedral_angle_4_deg 21.622 r_dihedral_angle_3_deg 12.471 r_dihedral_angle_1_deg 6.452 r_scangle_it 5.229 r_mcangle_it 3.444 r_scbond_it 3.372 r_mcbond_it 2.584 r_angle_refined_deg 1.691 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.458 r_dihedral_angle_4_deg 21.622 r_dihedral_angle_3_deg 12.471 r_dihedral_angle_1_deg 6.452 r_scangle_it 5.229 r_mcangle_it 3.444 r_scbond_it 3.372 r_mcbond_it 2.584 r_angle_refined_deg 1.691 r_nbtor_refined 0.298 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.215 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.123 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 657 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction BOS data collection