2FBU
Solution structure of the N-terminal fragment of human LL-37
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2 mM peptide and 80 mM SDS | 10% D2O/90% H2O | 80 | 5.4 | 1 atm | 288 | |
2 | 2D TOCSY | 2 mM peptide and 80 mM SDS | 10% D2O/90% H2O | 80 | 5.4 | 1 atm | 288 | |
3 | DQF-COSY | 2 mM peptide and 80 mM SDS | 10% D2O/90% H2O | 80 | 5.4 | 1 atm | 288 | |
4 | (H1, H13) HSQC | 2 mM peptide and 80 mM SDS | 10% D2O/90% H2O | 80 | 5.4 | 1 atm | 288 | |
5 | (H1, N15) HSQC | 2 mM peptide and 80 mM SDS | 10% D2O/90% H2O | 80 | 5.4 | 1 atm | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Xplor-NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | aromatic-aromatic interaction |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 5 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | A set of NMR data was also collected at 298 K |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | Xplor-NIH | 1.0 | GM Clore et al. |
2 | data analysis | PIPP | 1 | Dan Garrett |
3 | processing | NMRPipe | 2.1 | Frank Delaglio |
4 | refinement | TALOS | 1999 | Cornilescu, Frank Delaglio, Ad Bax |