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Crystal structure of the human RhoC-GSP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z2C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 291.15 3M Sodium Chloride, 0.1M Sodium Acetate, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
Crystal Properties Matthews coefficient Solvent content 2.68 54.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.435 α = 90 b = 59.435 β = 90 c = 138.09 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 54.593 100 0.122 0.122 6.1 11.8 14207 14205 3.8 3.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.27 100 100 0.583 0.583 1.3 11.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1z2c 2.15 54.55 3.8 14205 14152 710 99.92 0.16229 0.159 0.159 0.226 0.227 RANDOM 19.992
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.08 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.976 r_dihedral_angle_4_deg 22.198 r_dihedral_angle_3_deg 15.283 r_dihedral_angle_1_deg 6.034 r_scangle_it 4.424 r_scbond_it 2.957 r_mcangle_it 1.891 r_angle_refined_deg 1.733 r_mcbond_it 1.183 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.976 r_dihedral_angle_4_deg 22.198 r_dihedral_angle_3_deg 15.283 r_dihedral_angle_1_deg 6.034 r_scangle_it 4.424 r_scbond_it 2.957 r_mcangle_it 1.891 r_angle_refined_deg 1.733 r_mcbond_it 1.183 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.29 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.172 r_chiral_restr 0.125 r_symmetry_hbond_refined 0.12 r_bond_refined_d 0.016 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1420 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 43
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data reduction CCP4 data scaling