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HERA N-terminal domain in complex with AMP, crystal form 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 295 14% PEG6000, 0.3M CaCl2, 0.1M Tris/HCl pH9.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.21 44.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.564 α = 90 b = 42.838 β = 100.06 c = 68.645 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 140 IMAGE PLATE MAR scanner 345 mm plate osmic mirrors 2006-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 50 97.6 0.048 27.5 4.1 45511 45511 27.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.72 85.6 0.5 1.9 3.1 3976
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.66 50 43198 2302 97.63 0.19172 0.18919 0.1963 0.23942 0.2443 RANDOM 20.853
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.21 -0.39 -0.16 -1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.433 r_dihedral_angle_4_deg 18.286 r_dihedral_angle_3_deg 13.657 r_dihedral_angle_1_deg 5.269 r_scangle_it 3.865 r_scbond_it 2.511 r_angle_refined_deg 1.71 r_mcangle_it 1.632 r_mcbond_it 1.119 r_angle_other_deg 1.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.433 r_dihedral_angle_4_deg 18.286 r_dihedral_angle_3_deg 13.657 r_dihedral_angle_1_deg 5.269 r_scangle_it 3.865 r_scbond_it 2.511 r_angle_refined_deg 1.71 r_mcangle_it 1.632 r_mcbond_it 1.119 r_angle_other_deg 1.058 r_symmetry_vdw_refined 0.292 r_symmetry_vdw_other 0.262 r_mcbond_other 0.252 r_nbd_refined 0.232 r_nbd_other 0.216 r_metal_ion_refined 0.195 r_xyhbond_nbd_refined 0.18 r_nbtor_refined 0.174 r_symmetry_hbond_refined 0.157 r_chiral_restr 0.094 r_nbtor_other 0.082 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3132 Nucleic Acid Atoms Solvent Atoms 406 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data scaling COMO phasing