X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529810-15% PEG 2000 MMe, 0.3M (NH4)2HPO4, 0.05M TRIS, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3146.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.656α = 90
b = 67.694β = 106.53
c = 98.396γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42006-02-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X12B1.0000NSLSX12B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.95097.90.09412.73.57331071771
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.91.9795.30.4553.23.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.9507177168126362697.860.174960.172810.21556RANDOM26.707
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.88-0.250.030.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.329
r_dihedral_angle_4_deg15.265
r_dihedral_angle_3_deg12.029
r_dihedral_angle_1_deg6.381
r_scangle_it2.576
r_scbond_it1.766
r_angle_refined_deg1.236
r_mcangle_it1.212
r_angle_other_deg0.864
r_mcbond_it0.792
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.329
r_dihedral_angle_4_deg15.265
r_dihedral_angle_3_deg12.029
r_dihedral_angle_1_deg6.381
r_scangle_it2.576
r_scbond_it1.766
r_angle_refined_deg1.236
r_mcangle_it1.212
r_angle_other_deg0.864
r_mcbond_it0.792
r_nbd_refined0.198
r_symmetry_hbond_refined0.195
r_symmetry_vdw_other0.192
r_nbd_other0.184
r_nbtor_refined0.18
r_symmetry_vdw_refined0.172
r_mcbond_other0.165
r_xyhbond_nbd_refined0.159
r_nbtor_other0.083
r_chiral_restr0.076
r_metal_ion_refined0.055
r_xyhbond_nbd_other0.028
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6646
Nucleic Acid Atoms
Solvent Atoms615
Heterogen Atoms33

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CBASSdata collection