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The crystal structure of eIF4AIII-Barentsz complex at 3.0 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FUU PDB ENTRY 1FUU, 1FUK, 1P27 experimental model PDB 1FUK PDB ENTRY 1FUU, 1FUK, 1P27 experimental model PDB 1P27 PDB ENTRY 1FUU, 1FUK, 1P27
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 700 MM DI AMMONIUM TARTRATE, 100 MM NA ACETATE PH 4.6
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.76 α = 90 b = 107.19 β = 90 c = 243.95 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 15 94.2 0.22 4.3 3 18221 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.2 86.4 0.61 2 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FUU, 1FUK, 1P27 3 15 17157 903 100 0.276 0.273 0.298 0.328 0.3485 RANDOM 51.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.8 1.18 -1.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.067 r_dihedral_angle_3_deg 19.879 r_dihedral_angle_4_deg 19.633 r_dihedral_angle_1_deg 9.886 r_angle_refined_deg 1.436 r_scangle_it 1.11 r_angle_other_deg 0.959 r_scbond_it 0.716 r_mcangle_it 0.533 r_mcbond_it 0.457
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.067 r_dihedral_angle_3_deg 19.879 r_dihedral_angle_4_deg 19.633 r_dihedral_angle_1_deg 9.886 r_angle_refined_deg 1.436 r_scangle_it 1.11 r_angle_other_deg 0.959 r_scbond_it 0.716 r_mcangle_it 0.533 r_mcbond_it 0.457 r_nbd_refined 0.258 r_symmetry_vdw_other 0.256 r_nbd_other 0.196 r_nbtor_refined 0.196 r_xyhbond_nbd_refined 0.186 r_symmetry_vdw_refined 0.183 r_symmetry_hbond_refined 0.17 r_chiral_restr 0.135 r_nbtor_other 0.091 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5139 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing