2J1P

Geranylgeranyl diphosphate synthase from Sinapis alba in complex with GGPP

X-RAY DIFFRACTION

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Crystallization

Crystal Properties
Matthews coefficient	Solvent content
2.23	44.39

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 53.803	α = 90
b = 91.551	β = 96.89
c = 56.286	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH			M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA		SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	34	95.6	0.04	10.6	2		94523		-3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.9	91.5		0.48	1.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	1.8	32	46010	2458	96.7	0.172	0.17	0.209	RANDOM	17.74

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.19		-0.04	0.54		-0.36

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.66
r_dihedral_angle_4_deg	16.436
r_dihedral_angle_3_deg	14.485
r_dihedral_angle_1_deg	5.297
r_scangle_it	3.884
r_scbond_it	2.798
r_angle_refined_deg	1.689
r_mcangle_it	1.462
r_mcbond_it	1.29
r_angle_other_deg	1.064
r_symmetry_vdw_other	0.284
r_symmetry_vdw_refined	0.236
r_nbd_refined	0.228
r_nbd_other	0.195
r_nbtor_refined	0.178
r_xyhbond_nbd_refined	0.151
r_symmetry_hbond_refined	0.134
r_chiral_restr	0.103
r_nbtor_other	0.089
r_bond_refined_d	0.019
r_gen_planes_refined	0.006
r_bond_other_d	0.002
r_gen_planes_other	0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4173
Nucleic Acid Atoms
Solvent Atoms	190
Heterogen Atoms	47

Software

Software
Software Name	Purpose
REFMAC	refinement