2JDO

STRUCTURE OF PKB-BETA (AKT2) COMPLEXED WITH ISOQUINOLINE-5-SULFONIC ACID (2-(2-(4-CHLOROBENZYLOXY) ETHYLAMINO)ETHYL)AMIDE


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.1542.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.262α = 90
b = 60.7β = 90
c = 132.567γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.855950.066.42.7311452

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.855.1931145167694.60.1770.1750.21RANDOM19.86
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.06-1.221.28
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.008
r_dihedral_angle_4_deg15.971
r_dihedral_angle_3_deg12.267
r_dihedral_angle_1_deg5.557
r_angle_refined_deg1.096
r_angle_other_deg0.826
r_symmetry_vdw_other0.283
r_nbd_refined0.204
r_nbd_other0.187
r_nbtor_refined0.182
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.008
r_dihedral_angle_4_deg15.971
r_dihedral_angle_3_deg12.267
r_dihedral_angle_1_deg5.557
r_angle_refined_deg1.096
r_angle_other_deg0.826
r_symmetry_vdw_other0.283
r_nbd_refined0.204
r_nbd_other0.187
r_nbtor_refined0.182
r_symmetry_hbond_refined0.123
r_symmetry_vdw_refined0.121
r_scangle_it0.109
r_mcangle_it0.09
r_xyhbond_nbd_refined0.086
r_nbtor_other0.08
r_scbond_it0.078
r_chiral_restr0.068
r_mcbond_it0.061
r_mcbond_other0.025
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2666
Nucleic Acid Atoms
Solvent Atoms323
Heterogen Atoms32

Software

Software
Software NamePurpose
REFMACrefinement