2JQZ
Solution Structure of the C2 domain of human Smurf2
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM HEPES, 200 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide | 90% H2O/10% D2O | 0.2 | 7.2 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 20 mM hepes, 200 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide | 100% D2O | 0.2 | 7.2 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 20 mM HEPES, 200 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide | 90% H2O/10% D2O | 0.2 | 7.2 | ambient | 298 | |
4 | 3D C(CO)NH | 20 mM HEPES, 200 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide | 90% H2O/10% D2O | 0.2 | 7.2 | ambient | 298 | |
5 | 3D HNCA | 20 mM HEPES, 200 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide | 90% H2O/10% D2O | 0.2 | 7.2 | ambient | 298 | |
6 | 3D HNCACB | 20 mM HEPES, 200 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide | 90% H2O/10% D2O | 0.2 | 7.2 | ambient | 298 | |
7 | 3D HN(CO)CA | 20 mM HEPES, 200 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide | 90% H2O/10% D2O | 0.2 | 7.2 | ambient | 298 | |
8 | 3D H(CCO)NH | 20 mM HEPES, 200 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide | 90% H2O/10% D2O | 0.2 | 7.2 | ambient | 298 | |
9 | 3D 1H-15N NOESY | 20 mM HEPES, 200 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide | 90% H2O/10% D2O | 0.2 | 7.2 | ambient | 298 | |
10 | 3D 1H-13C NOESY | 20 mM hepes, 200 mM sodium chloride, 3 mM DTT, 0.03 % sodium azide | 100% D2O | 0.2 | 7.2 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
2 | chemical shift assignment | XEASY | Bartels et al. | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | refinement | ARIA | 1.2 | Linge, O'Donoghue and Nilges |