2JRJ
Solution structure of the human Pirh2 RING-H2 domain. Northeast Structural Genomics Consortium Target HT2B
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D C(CO)NH | 0.7 mM [U-13C; U-15N] Pirh2 RING domain, 25 mM sodium phosphate, 150 mM potassium chloride, 10 uM ZnCl2, 2 mM [U-99% 2H] DTT | 90% H2O/10% D2O | 150 | 7.0 | ambient | 300 | |
2 | 3D HNCACB | 0.7 mM [U-13C; U-15N] Pirh2 RING domain, 25 mM sodium phosphate, 150 mM potassium chloride, 10 uM ZnCl2, 2 mM [U-99% 2H] DTT | 90% H2O/10% D2O | 150 | 7.0 | ambient | 300 | |
3 | 3D H(CCO)NH | 0.7 mM [U-13C; U-15N] Pirh2 RING domain, 25 mM sodium phosphate, 150 mM potassium chloride, 10 uM ZnCl2, 2 mM [U-99% 2H] DTT | 90% H2O/10% D2O | 150 | 7.0 | ambient | 300 | |
4 | 3D HNCO | 0.7 mM [U-13C; U-15N] Pirh2 RING domain, 25 mM sodium phosphate, 150 mM potassium chloride, 10 uM ZnCl2, 2 mM [U-99% 2H] DTT | 90% H2O/10% D2O | 150 | 7.0 | ambient | 300 | |
5 | 3D 1H-15N NOESY | 0.7 mM [U-13C; U-15N] Pirh2 RING domain, 25 mM sodium phosphate, 150 mM potassium chloride, 10 uM ZnCl2, 2 mM [U-99% 2H] DTT | 90% H2O/10% D2O | 150 | 7.0 | ambient | 300 | |
6 | 3D 1H-13C NOESY | 0.7 mM [U-13C; U-15N] Pirh2 RING domain, 25 mM sodium phosphate, 150 mM potassium chloride, 10 uM ZnCl2, 2 mM [U-99% 2H] DTT | 100% D2O | 150 | 7.0 | ambient | 300 | |
7 | 3D HCCH-TOCSY | 0.7 mM [U-13C; U-15N] Pirh2 RING domain, 25 mM sodium phosphate, 150 mM potassium chloride, 10 uM ZnCl2, 2 mM [U-99% 2H] DTT | 100% D2O | 150 | 7.0 | ambient | 300 | |
8 | 3D 1H-13C_aromatic NOESY | 0.7 mM [U-13C; U-15N] Pirh2 RING domain, 25 mM sodium phosphate, 150 mM potassium chloride, 10 uM ZnCl2, 2 mM [U-99% 2H] DTT | 100% D2O | 150 | 7.0 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | peak picking | XEASY | Bartels et al. | |
3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |