2JYW
Solution structure of C-terminal domain of APOBEC3G
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 300 mM [U-100% 15N] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
2 | 2D 1H-13C HSQC | 300 mM [U-100% 13C; U-100% 15N; 80% 2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
3 | 3D HNCO | 300 mM [U-100% 13C; U-100% 15N; 80% 2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
4 | 3D HNCA | 300 mM [U-100% 13C; U-100% 15N; 80% 2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
5 | 3D HNCACB | 300 mM [U-100% 13C; U-100% 15N; 80% 2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
6 | 3D HN(CO)CA | 300 mM [U-100% 13C; U-100% 15N; 80% 2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
7 | 3D H(CCO)NH | 300 mM [U-100% 13C; U-100% 15N; 80% 2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
8 | 3D HNCACO | 300 mM [U-100% 13C; U-100% 15N; 80% 2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
9 | 3D HN(COCA)CB | 300 mM [U-100% 13C; U-100% 15N; 80% 2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
10 | 3D C(CO)NH | 300 mM [U-100% 13C; U-100% 15N; 80% 2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
11 | 3D HCCH-TOCSY | 300 mM [U-100% 13C; U-100% 15N; 80% 2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
12 | 3D 1H-15N NOESY | 300 mM [U-100% 15N, 80%2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
13 | 3D 1H-13C NOESY | 300 mM [U-100% 13C; U-100% 15N; 80% 2H] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 | |
14 | 3D 1H-15N NOESY | 300 mM [U-100% 15N] Apobec3G | 95% H2O/5% D2O | 0 | 7.4 | ambient | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 800 |
3 | Varian | INOVA | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | lowest energy, ramachandran parameters |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.2 | Brunger, A.T. et al. |
2 | data analysis | CARA | 1.8.3 | Keller, R. et al. |
3 | chemical shift assignment | CARA | 1.8.3 | Keller, R. et al. |
4 | processing | NMRDraw | 2.5 | Delaglio, F. et al. |
5 | chemical shift assignment | NMRDraw | 2.5 | Delaglio, F. et al. |
6 | structure solution | Atnos/Candid | 1.1 | Herrmann, T. et al. |
7 | chemical shift assignment | Atnos/Candid | 1.1 | Herrmann, T. et al. |