2K32
Truncated AcrA from Campylobacter jejuni for glycosylation studies
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-100% 13C; U-100% 15N] AcrA(61-210DD), 50 mM potassium phosphate | 95% H2O/5% D2O | 50 | 6.4 | ambient | 303 | |
2 | 2D 1H-13C HSQC | 1 mM [U-100% 13C; U-100% 15N] AcrA(61-210DD), 50 mM potassium phosphate | 95% H2O/5% D2O | 50 | 6.4 | ambient | 303 | |
3 | 2D 1H-1H NOESY | 1 mM [U-100% 15N] AcrA(61-210DD), 50 mM potassium phosphate | 95% H2O/5% D2O | 50 | 6.4 | ambient | 303 | |
4 | 2D 1H-1H NOESY | 1 mM [U-100% 15N] AcrA(61-210DD), 50 mM potassium phosphate | 100% D2O | 50 | 6.4 | ambient | 303 | |
5 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N] AcrA(61-210DD), 50 mM potassium phosphate | 95% H2O/5% D2O | 50 | 6.4 | ambient | 303 | |
6 | 3D HNCA | 1 mM [U-100% 13C; U-100% 15N] AcrA(61-210DD), 50 mM potassium phosphate | 95% H2O/5% D2O | 50 | 6.4 | ambient | 303 | |
7 | 3D HN(CO)CA | 1 mM [U-100% 13C; U-100% 15N] AcrA(61-210DD), 50 mM potassium phosphate | 95% H2O/5% D2O | 50 | 6.4 | ambient | 303 | |
8 | 2D 1H-15N HSQC | 1 mM [U-100% 15N] AcrA(61-210DD), 50 mM potassium phosphate | 100% D2O | 50 | 6.4 | ambient | 303 | |
9 | 3D HCCH-TOCSY | 1 mM [U-100% 13C; U-100% 15N] AcrA(61-210DD), 50 mM potassium phosphate | 95% H2O/5% D2O | 50 | 6.4 | ambient | 303 | |
10 | 3D 1H-13C NOESY | 1 mM [U-100% 13C; U-100% 15N] AcrA(61-210DD), 50 mM potassium phosphate | 95% H2O/5% D2O | 50 | 6.4 | ambient | 303 | |
11 | 3D 1H-15N NOESY | 1 mM [U-100% 15N] AcrA(61-210DD), 50 mM potassium phosphate | 95% H2O/5% D2O | 50 | 6.4 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | AVANCE | 750 |
3 | Bruker | AVANCE | 600 |
4 | Bruker | AVANCE | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 8 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman |
2 | geometry optimization | ATNOSCANDID | Herrmann, Guntert, Wuthrich | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | processing | TopSpin | 2.0 | Bruker Biospin |