2LHX
Di-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 2-10 mM MUC2 Mucin Domain Peptide, 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE) | 100% D2O | 4.5 | ambient | 288 | ||
2 | 3D TOCSY-NOESY | 2-10 mM MUC2 Mucin Domain Peptide, 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE) | 90% H2O/10% D2O | 4.5 | ambient | 288 | ||
3 | 2D 1H-15N HSQC | 2-10 mM MUC2 Mucin Domain Peptide, 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE) | 90% H2O/10% D2O | 4.5 | ambient | 288 | ||
4 | 2D 1H-13C HSQC | 2-10 mM MUC2 Mucin Domain Peptide, 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE) | 90% H2O/10% D2O | 4.5 | ambient | 288 | ||
5 | 2D 1H-1H TOCSY | 2-10 mM MUC2 Mucin Domain Peptide, 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE) | 90% H2O/10% D2O | 4.5 | ambient | 288 | ||
6 | 2D 1H-1H COSY | 2-10 mM MUC2 Mucin Domain Peptide, 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE) | 100% D2O | 4.5 | ambient | 288 | ||
7 | 2D 1H-13C HMBC | 2-10 mM MUC2 Mucin Domain Peptide, 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE), 2-10 mM SUGAR (N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE) | 90% H2O/10% D2O | 4.5 | ambient | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 800 |
3 | Varian | INOVA | 900 |
NMR Refinement | ||
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Method | Details | Software |
torsion space simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 24 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | Brunger A. T. et.al. | |
2 | refinement | XPLOR-NIH | Schwieters, Kuszewski, Tjandra and Clore |