2LUN
RNA Aptamer for B. anthracis Ribosomal Protein S8
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-13C HSQC | 1.6 mM [U-98% 13C; U-98% 15N] RNA | 100% D2O | 50 | ambient | 299 | ||
2 | 3D 1H-13C NOESY | 1.6 mM [U-98% 13C; U-98% 15N] RNA | 100% D2O | 50 | ambient | 299 | ||
3 | 2D 1H-15N HSQC | 1.5 mM [U-98% 13C; U-98% 15N] RNA | 90% H2O/10% D2O | 50 | 6.8 | ambient | 287 | |
4 | 2D 1H-1H NOESY | 1.5 mM [U-98% 13C; U-98% 15N] RNA | 90% H2O/10% D2O | 50 | 6.8 | ambient | 287 | |
5 | 2D 1H-1H NOESY | 1.6 mM [U-98% 13C; U-98% 15N] RNA | 100% D2O | 50 | ambient | 299 | ||
6 | 3D HCCH-COSY | 1.6 mM [U-98% 13C; U-98% 15N] RNA | 100% D2O | 50 | ambient | 299 | ||
7 | 3D 1H-13C NOESY | 1.6 mM [U-98% 13C; U-98% 15N] RNA | 100% D2O | 50 | ambient | 299 | ||
8 | 3D HCCH-TOCSY | 1.6 mM [U-98% 13C; U-98% 15N] RNA | 100% D2O | 50 | ambient | 299 | ||
9 | 2D 1H-31P HetCor | 1.6 mM [U-98% 13C; U-98% 15N] RNA | 100% D2O | 50 | ambient | 299 | ||
10 | 2D 1H-15N HNC-TOCSY-CH | 1.5 mM [U-98% 13C; U-98% 15N] RNA | 90% H2O/10% D2O | 50 | ambient | 299 | ||
11 | 2D 1H-13C H(N)CO | 1.5 mM [U-98% 13C; U-98% 15N] RNA | 90% H2O/10% D2O | 50 | 6.8 | ambient | 287 | |
12 | 2D 1H-13C CCH-COSY | 1.6 mM [U-98% 13C; U-98% 15N] RNA | 100% D2O | 50 | ambient | 299 | ||
13 | 2D 1H-13C HCNC | 1.6 mM [U-98% 13C; U-98% 15N] RNA | 100% D2O | 50 | ambient | 299 | ||
14 | 2D 1H-15N HSQC | 1.6 mM [U-98% 13C; U-98% 15N] RNA | 100% D2O | 50 | ambient | 299 | ||
15 | 2D 1H-15N HCN | 1.6 mM [U-98% 13C; U-98% 15N] RNA | 100% D2O | 50 | ambient | 299 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 800 |
3 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 8 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | data analysis | Felix | Accelrys Software Inc. | |
3 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |