2MBY
NMR Structure of Rrp7 C-terminal Domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM potassium phosphate, 0.05 % sodium azide | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
2 | 3D 1H-15N TOCSY | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM potassium phosphate, 0.05 % sodium azide | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM potassium phosphate, 0.05 % sodium azide | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
4 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM potassium phosphate, 0.05 % sodium azide | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
5 | 3D HNCO | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM potassium phosphate, 0.05 % sodium azide | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
6 | 3D HN(CO)CA | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM potassium phosphate, 0.05 % sodium azide | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
7 | 3D HBHA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM potassium phosphate, 0.05 % sodium azide | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
8 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM potassium phosphate, 0.05 % sodium azide | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
9 | 3D HCCH-TOCSY | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM potassium phosphate, 0.05 % sodium azide | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
10 | 3D 1H-15N NOESY | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM potassium phosphate, 0.05 % sodium azide | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
11 | 3D 1H-13C NOESY | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM potassium phosphate, 0.05 % sodium azide | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | peak picking | NMRView | Johnson, One Moon Scientific | |
4 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
5 | processing | Felix | Accelrys Software Inc. |