2MI2
Solution structure of the E. coli TatB protein in DPC micelles
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 2 | 2D 1H-13C HSQC | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 3 | 3D CBCA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 4 | 3D HNCO | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 5 | 3D HNCA | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 6 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 7 | 3D HBHA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 8 | 3D HN(CO)CA | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 9 | 3D HCCH-TOCSY | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 10 | 3D HCCH-COSY | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 11 | 3D 1H-13C NOESY aromatic | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 12 | 3D 1H-13C NOESY aliphatic | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| 13 | 3D 1H-15N NOESY | 1 mM [U-100% 13C; U-100% 15N] transport protein-1, 20 mM sodium acetate-2, 40 mM DPC-3 | 90% H2O/10% D2O | 0.02 | 5.5 | ambient | 313 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 500 |
| 2 | Bruker | AVANCE | 600 |
| 3 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 15 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 2 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
| 3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 4 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
| 5 | data analysis | ProcheckNMR | Laskowski and MacArthur | |
| 6 | data analysis | SANE | Duggan, Legge, Dyson & Wright | |
| 7 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
