Experiment: 2MKC

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
2	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
3	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
4	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
5	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p	90% H2O/10% D2O		6.8	ambient	308
6	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p	90% H2O/10% D2O		6.8	ambient	308
7	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p	90% H2O/10% D2O		6.8	ambient	308
8	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p	90% H2O/10% D2O		6.8	ambient	308
9	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
10	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
11	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
12	2D 1H-15N HSQC	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
13	3D HNCO	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
14	3D HNCA	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
15	3D HNCA	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p	90% H2O/10% D2O		6.8	ambient	308
16	3D HNCA	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
17	3D HNCACB	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N; U-2H] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
18	3D HN(CO)CA	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
19	3D HN(CO)CA	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p	90% H2O/10% D2O		6.8	ambient	308
20	3D HN(CO)CA	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
21	3D HCCH-TOCSY	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
22	3D HCCH-TOCSY	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p	90% H2O/10% D2O		6.8	ambient	308
23	3D HCCH-TOCSY	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
24	3D 1H-15N NOESY	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
25	3D 1H-15N NOESY	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p	90% H2O/10% D2O		6.8	ambient	308
26	3D 1H-15N NOESY	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
27	3D 1H-15N NOESY	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM [U-13C; U-15N; U-2H] Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
28	3D 1H-13C NOESY aliphatic	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
29	3D 1H-13C NOESY aliphatic	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p	90% H2O/10% D2O		6.8	ambient	308
30	3D 1H-13C NOESY aliphatic	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
31	3D 1H-13C NOESY aliphatic	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM [U-13C; U-15N; U-2H] Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
32	3D 1H-13C NOESY aromatic	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
33	3D 1H-13C NOESY aromatic	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p	90% H2O/10% D2O		6.8	ambient	308
34	3D 1H-13C NOESY aromatic	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
35	3D HCCH-TOCSY	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM [U-13C; U-15N; U-2H] Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
36	3D 1H-13C NOESY filtered/edited	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
37	3D 1H-13C NOESY filtered/edited	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 1.2-1.5 mM Bud13p, 0.8-1.0 mM [U-13C; U-15N] Pml1p	90% H2O/10% D2O		6.8	ambient	308
38	HBCBCGCDHD	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
39	3D CCH-TOCSY	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 0.9-1.3 mM [U-13C; U-15N] Snu17p, 1.1-1.5 mM Bud13p, 1.4-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
40	3D CBCA(CO)NH	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308
41	3D 1H-15N NOESY ARG-centered	25 mM sodium phosphate, 250 mM NaCl, 1 mM sodium azide, 1.0-1.3 mM Snu17p, 0.8-1.0 mM [U-10% 13C; U-99% 15N] Bud13p, 1.5-1.9 mM Pml1p	90% H2O/10% D2O		6.8	ambient	308

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	900
2	Bruker	AVANCE	800
3	Bruker	AVANCE	700
4	Bruker	AVANCE	600
5	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing	WATER REFINEMENT (RECOORD)	CYANA

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	500
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
2	refinement	CNS	1.2	Brunger, Adams, Clore, Gros, Nilges and Read
3	processing	TopSpin	3.1	Bruker Biospin
4	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	data analysis	Analysis_CCPN		CCPN

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

2MKC

Cooperative Structure of the Heterotrimeric pre-mRNA Retention and Splicing Complex