2MN5
NMR structure of Copsin
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 70 | 6.8 | ambient | 293 | |
2 | 2D 1H-13C HSQC | 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 70 | 6.8 | ambient | 293 | |
3 | 2D 1H-1H TOCSY | 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 70 | 6.8 | ambient | 293 | |
4 | 2D DQF-COSY | 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 70 | 6.8 | ambient | 293 | |
5 | 2D 1H-1H NOESY | 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 70 | 6.8 | ambient | 293 | |
6 | 3D 1H-15N TOCSY | 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 70 | 6.8 | ambient | 293 | |
7 | 3D HN(CO)CA | 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 70 | 6.8 | ambient | 293 | |
8 | 3D 1H-15N NOESY | 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 70 | 6.8 | ambient | 293 | |
9 | 3D 1H-13C NOESY | 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 70 | 6.8 | ambient | 293 | |
10 | 2D 1H-1H NOESY | 20 mM sodium phosphate, 50 mM sodium chloride | 100% D2O | 70 | 6.8 | ambient | 293 | |
11 | 3D HNCO | 20 mM sodium phosphate, 50 mM sodium chloride | 100% D2O | 70 | 6.8 | ambient | 293 | |
12 | 2D 1H-15N HSQC | 20 mM sodium phosphate, 50 mM sodium chloride | 90% H2O/10% D2O | 70 | 7.4 | ambient | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 600 |
3 | Bruker | AVANCE | 700 |
4 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
---|---|
Details | the structure calculation was performed using 2D and 3D noesy experiments, including hydrogen bonds determined by long range HNCO spectra |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 9 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman |
2 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
3 | data analysis | ProcheckNMR | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton | |
4 | chemical shift assignment | XEASY | 1.8.4 | Bartels et al. |
5 | peak picking | XEASY | 1.8.4 | Bartels et al. |
6 | collection | TopSpin | 3.0 | Bruker Biospin |
7 | data analysis | TALOS | talos+ | Cornilescu, Delaglio and Bax |