2NDO
Structure of EcDsbA-sulfonamide1 complex
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D F1- 13 C, 15 N-filtered, F3 - 13 C ali (methyl) edited [ 1 H, 1 H]-NOESY | 0.4 mM [U-99% 13C; U-99% 15N] Oxidised EcDsbA, 1.5 mM Sulfonamide1 | 100% D2O | 50 | 6.8 | ambient atm | 300 | |
2 | 2D F1-edited, F2-13C,15N-Filtered [1H,1H]-NOESY | 0.4 mM [U-99% 13C; U-99% 15N] Oxidised EcDsbA, 1.5 mM Sulfonamide1 | 100% D2O | 50 | 6.8 | ambient atm | 300 | |
3 | 2D 1H-13C HSQC | 0.4 mM [U-99% 13C; U-99% 15N] Oxidised EcDsbA, 1.5 mM Sulfonamide1 | 100% D2O | 50 | 6.8 | ambient atm | 300 | |
4 | 2D 1H-13C HSQC | 0.35 mM Isotopomer sample Oxidised EcDsbA | 95% H2O/5% D2O | 50 | 6.8 | ambient atm | 300 | |
5 | 3D CHD2-C-TOCSY | 0.35 mM Isotopomer sample Oxidised EcDsbA | 95% H2O/5% D2O | 50 | 6.8 | ambient atm | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | AVANCE | 800 |
3 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | The released PDB entry 1FVK was used for HADDOCK model building | CARA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | CARA | Keller and Wuthrich | |
2 | rigid body docking | HADDOCK | 2.1 | Alexandre Bonvin |
3 | simulated annealing | HADDOCK | 2.1 | Alexandre Bonvin |
4 | water refinement | HADDOCK | 2.1 | Alexandre Bonvin |
5 | refinement | HADDOCK |