X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1hanging drop7.5298PEG4000 Glycerol MgCl NH2SO4, pH 7.5, hanging drop, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.2645.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.45α = 90
b = 149.12β = 90
c = 79.64γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray113IMAGE PLATERIGAKU RAXIS IV++2007-03-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5519.7497.10.04615.74.3844381
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.6194.20.3323.43.74224

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.5519.7444380225897.060.2050.2040.229RANDOM17.234
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.520.110.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.013
r_dihedral_angle_4_deg16.503
r_dihedral_angle_3_deg13.233
r_dihedral_angle_1_deg6.084
r_scangle_it2.735
r_scbond_it1.777
r_angle_refined_deg1.353
r_mcangle_it1.165
r_mcbond_it0.762
r_nbtor_refined0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.013
r_dihedral_angle_4_deg16.503
r_dihedral_angle_3_deg13.233
r_dihedral_angle_1_deg6.084
r_scangle_it2.735
r_scbond_it1.777
r_angle_refined_deg1.353
r_mcangle_it1.165
r_mcbond_it0.762
r_nbtor_refined0.31
r_nbd_refined0.204
r_symmetry_vdw_refined0.202
r_symmetry_hbond_refined0.157
r_xyhbond_nbd_refined0.099
r_chiral_restr0.098
r_bond_refined_d0.011
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2395
Nucleic Acid Atoms
Solvent Atoms196
Heterogen Atoms60

Software

Software
Software NamePurpose
d*TREKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
d*TREKdata reduction