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N- and C-terminal helices of oat LOV2 (404-546) are involved in light-induced signal transduction (room temperature (293K) light structure of LOV2 (404-546))
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V0U PDB ENTRY 2V0U
Crystallization Crystal Properties Matthews coefficient Solvent content 2.16 43.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.919 α = 90 b = 57.169 β = 90 c = 67.228 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD ADSC CCD BENT CONICAL SI-MIRROR (RH COATED) M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 96 0.043 29.6 3.5 19930
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 96 0.36 2.4 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2V0U 1.55 16.12 18897 1012 96.4 0.166 0.164 0.2064 0.212 0.2459 RANDOM 16.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 0.3 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.405 r_dihedral_angle_3_deg 14.251 r_dihedral_angle_4_deg 14.175 r_dihedral_angle_1_deg 6.08 r_scangle_it 4.064 r_scbond_it 2.927 r_angle_refined_deg 1.634 r_mcangle_it 1.415 r_mcbond_it 1.341 r_angle_other_deg 0.966
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.405 r_dihedral_angle_3_deg 14.251 r_dihedral_angle_4_deg 14.175 r_dihedral_angle_1_deg 6.08 r_scangle_it 4.064 r_scbond_it 2.927 r_angle_refined_deg 1.634 r_mcangle_it 1.415 r_mcbond_it 1.341 r_angle_other_deg 0.966 r_symmetry_vdw_refined 0.331 r_symmetry_vdw_other 0.286 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.209 r_nbd_other 0.198 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.101 r_nbtor_other 0.088 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1173 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing