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Crystal structure of the regulatory fragment of mammalian AMPK in complexes with AMP
Crystallization Crystal Properties Matthews coefficient Solvent content 3 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.522 α = 90 b = 119.39 β = 90 c = 129.31 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 99 0.06 18.7 5.6 42012 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 20 42012 2234 99 0.213 0.212 0.2409 0.237 RANDOM 44.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.73 3.06 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.233 r_dihedral_angle_4_deg 19.941 r_dihedral_angle_3_deg 18.379 r_dihedral_angle_1_deg 7.475 r_scangle_it 2.233 r_angle_refined_deg 1.439 r_scbond_it 1.435 r_mcangle_it 1.157 r_mcbond_it 0.682 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.233 r_dihedral_angle_4_deg 19.941 r_dihedral_angle_3_deg 18.379 r_dihedral_angle_1_deg 7.475 r_scangle_it 2.233 r_angle_refined_deg 1.439 r_scbond_it 1.435 r_mcangle_it 1.157 r_mcbond_it 0.682 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.225 r_symmetry_hbond_refined 0.216 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.11 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3884 Nucleic Acid Atoms Solvent Atoms 428 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement