2W9L

CANINE ADENOVIRUS TYPE 2 FIBRE HEAD IN COMPLEX WITH CAR DOMAIN D1 AND SIALIC ACID

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2J1K	PDB ENTRY 2J1K

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1				20% POLYETHYLENE GLYCOL MONOMETHYL-ETHER 550, 0.1 M BICINE, PH 9, 0.1 M NACL

Crystal Properties
Matthews coefficient	Solvent content
2.9	56

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 221.15	α = 90
b = 221.15	β = 90
c = 391.6	γ = 90

Symmetry
Space Group	I 4 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC CCD		2005-04-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID14-4		ESRF	ID14-4

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.9	49.6	98.3	0.14	14.18	8.18		105112		1

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.9	3	93.2		0.53	3.3	8.37

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 2J1K	2.91	49.63	104076	1034	99	0.197	0.197	0.2	0.254	0.25	RANDOM	33.92

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.54			-1.54		3.09

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.576
r_dihedral_angle_3_deg	15.872
r_dihedral_angle_4_deg	14.287
r_dihedral_angle_1_deg	6.699
r_scangle_it	1.448
r_angle_refined_deg	1.363
r_angle_other_deg	0.977
r_scbond_it	0.823
r_mcangle_it	0.391
r_mcbond_it	0.305
r_symmetry_hbond_refined	0.211
r_nbd_refined	0.194
r_symmetry_vdw_other	0.194
r_nbd_other	0.19
r_symmetry_vdw_refined	0.187
r_nbtor_refined	0.177
r_chiral_restr	0.149
r_xyhbond_nbd_refined	0.124
r_nbtor_other	0.085
r_bond_refined_d	0.01
r_gen_planes_refined	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	28130
Nucleic Acid Atoms
Solvent Atoms	157
Heterogen Atoms	384

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing