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E. coli succinate:quinone oxidoreductase (SQR) with an empty quinone- binding pocket
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.1M TRIS PH 8.5, 0.1M MGSO4, 10% PEG4000
Crystal Properties Matthews coefficient Solvent content 3.16 61.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.34 α = 90 b = 184.847 β = 90 c = 204.72 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 52.85 99.8 0.15 8.7 3.6 76081 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.37 100 0.7 2.2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 3.2 51.85 71862 3844 99.7 0.206 0.205 0.2069 0.233 0.2357 SELECTED TO BE IDENTICAL TO 2WDQ 54.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.71 1.74 2.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.597 r_dihedral_angle_4_deg 17.789 r_dihedral_angle_3_deg 16.194 r_dihedral_angle_1_deg 5.281 r_angle_refined_deg 1.264 r_scbond_it 1.067 r_scangle_it 0.969 r_mcangle_it 0.284 r_mcbond_it 0.149 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.597 r_dihedral_angle_4_deg 17.789 r_dihedral_angle_3_deg 16.194 r_dihedral_angle_1_deg 5.281 r_angle_refined_deg 1.264 r_scbond_it 1.067 r_scangle_it 0.969 r_mcangle_it 0.284 r_mcbond_it 0.149 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 24480 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 375
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing