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Mixed-function P450 MycG in complex with mycinamicin III in P21212 space group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Y4H PDB ENTRY 2Y4H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.6 M SUCCINIC ACID, PH 7.0 .
Crystal Properties Matthews coefficient Solvent content 2.58 52.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.747 α = 90 b = 162.33 β = 90 c = 49.789 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315r MIRRORS 2011-03-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 81.17 99.9 0.12 7.6 4.2 43565 1.5 18.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 99.9 0.93 1.5 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2Y4H 1.8 162.33 41348 2191 99.74 0.1551 0.15216 0.1544 0.21027 0.21 RANDOM 23.068
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.57 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.716 r_dihedral_angle_4_deg 19.86 r_dihedral_angle_3_deg 14.896 r_scangle_it 7.146 r_dihedral_angle_1_deg 5.623 r_scbond_it 4.88 r_mcangle_it 2.908 r_rigid_bond_restr 2.735 r_mcbond_it 1.878 r_angle_refined_deg 1.875
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.716 r_dihedral_angle_4_deg 19.86 r_dihedral_angle_3_deg 14.896 r_scangle_it 7.146 r_dihedral_angle_1_deg 5.623 r_scbond_it 4.88 r_mcangle_it 2.908 r_rigid_bond_restr 2.735 r_mcbond_it 1.878 r_angle_refined_deg 1.875 r_chiral_restr 0.122 r_bond_refined_d 0.024 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3090 Nucleic Acid Atoms Solvent Atoms 328 Heterogen Atoms 117
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing