X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1CBGPDB ENTRY 1CBG

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.728822% PEG MME 5000, 0.18M AMMONIUM SULFATE, 0.1M MES, PH 6.7,, VAPOR DIFFUSION, HANGING DROP, temperature 288K
Crystal Properties
Matthews coefficientSolvent content
2.3146.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.226α = 90
b = 100.387β = 90
c = 127.407γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray105CCDADSC QUANTUM 315r2007-03-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE BL13B10.98NSRRCBL13B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.893099.10.08313.37803897963525.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.91.9798.90.3526.16.77908

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1CBG1.8927.7576370394898.230.190620.189440.21339COPIED FROM 2RGL AND RANDOMLY EXTENDED15.594
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.541.89-1.35
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.318
r_dihedral_angle_4_deg21.779
r_dihedral_angle_3_deg11.818
r_dihedral_angle_1_deg5.843
r_scangle_it3.322
r_scbond_it2.1
r_angle_refined_deg1.442
r_mcangle_it1.295
r_mcbond_it0.712
r_chiral_restr0.164
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.318
r_dihedral_angle_4_deg21.779
r_dihedral_angle_3_deg11.818
r_dihedral_angle_1_deg5.843
r_scangle_it3.322
r_scbond_it2.1
r_angle_refined_deg1.442
r_mcangle_it1.295
r_mcbond_it0.712
r_chiral_restr0.164
r_bond_refined_d0.014
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7618
Nucleic Acid Atoms
Solvent Atoms662
Heterogen Atoms81

Software

Software
Software NamePurpose
ADSCdata collection
AMoREphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling