☰ Navigation Tabs
Crystal structure of cppA protein from Streptococcus pneumoniae TIGR4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 291 0.01M sodium citrate
33% PEG 6000, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.07 59.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.742 α = 90 b = 130.741 β = 90 c = 91.535 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 mirrors 2007-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9794 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 97.7 0.151 9.5 4.4 63993 62250 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 83.4 0.555 2 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 40 60080 57016 3064 97.17 0.1922 0.19277 0.18934 0.1982 0.25632 RANDOM 20.228
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.91 -1.15 -1.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.115 r_dihedral_angle_4_deg 18.796 r_dihedral_angle_3_deg 16.961 r_dihedral_angle_1_deg 7.571 r_scangle_it 3.077 r_scbond_it 2.204 r_angle_refined_deg 1.758 r_mcangle_it 1.291 r_angle_other_deg 1.007 r_mcbond_it 1.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.115 r_dihedral_angle_4_deg 18.796 r_dihedral_angle_3_deg 16.961 r_dihedral_angle_1_deg 7.571 r_scangle_it 3.077 r_scbond_it 2.204 r_angle_refined_deg 1.758 r_mcangle_it 1.291 r_angle_other_deg 1.007 r_mcbond_it 1.005 r_symmetry_vdw_other 0.286 r_symmetry_vdw_refined 0.269 r_nbd_other 0.203 r_nbd_refined 0.197 r_mcbond_other 0.188 r_xyhbond_nbd_refined 0.187 r_nbtor_refined 0.174 r_symmetry_hbond_refined 0.169 r_chiral_restr 0.1 r_nbtor_other 0.091 r_bond_refined_d 0.02 r_gen_planes_refined 0.006 r_xyhbond_nbd_other 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7602 Nucleic Acid Atoms Solvent Atoms 549 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELX phasing Coot model building MLPHARE phasing PHENIX phasing REFMAC phasing ARP/wARP model building