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The Glycogen phosphorylase b R state- AMP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ABB pdb entry 1abb
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 7.5 289 1.2-1.4 M ammonium sulphate, pH 7.5, MICRODIALYSIS, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.39 48.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.019 α = 90 b = 188.079 β = 108.92 c = 175.913 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD ADSC QUANTUM 4 2002-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 0.87 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 29.85 94.3 0.09 6.2 189203 189160 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.75 92.2 0.521 1.67
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1abb 2.7 29.79 179705 9450 100 0.19517 0.19193 0.25609 0.265 RANDOM 24.671
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.03 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.476 r_dihedral_angle_3_deg 20.633 r_dihedral_angle_4_deg 18.459 r_dihedral_angle_1_deg 5.915 r_scangle_it 1.763 r_angle_refined_deg 1.297 r_scbond_it 1.045 r_mcangle_it 0.873 r_mcbond_it 0.518 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.476 r_dihedral_angle_3_deg 20.633 r_dihedral_angle_4_deg 18.459 r_dihedral_angle_1_deg 5.915 r_scangle_it 1.763 r_angle_refined_deg 1.297 r_scbond_it 1.045 r_mcangle_it 0.873 r_mcbond_it 0.518 r_nbtor_refined 0.31 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.194 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.114 r_chiral_restr 0.096 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 52898 Nucleic Acid Atoms Solvent Atoms 350 Heterogen Atoms 264
Software Software Software Name Purpose REFMAC refinement MAR345 data collection DENZO data reduction SCALEPACK data scaling PHASER phasing