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Glycogen phosphorylase R state-IMP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ABB pdb entry 2abb
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 7.5 289 1.1-1.3M ammonium sulfate, 10mM beta-glycerophosphate buffer pH 7.5, 0.5mM EDTA, MICRODIALYSIS, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.38 48.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.68 α = 90 b = 188.448 β = 109.1 c = 87.853 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.8063 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 99 99.5 0.061 7.07 2.7 111241 105631 -3 65.109
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 96.4 0.441 2.62 2.5 5388
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT pdb entry 2abb 2.6 30 105631 5573 99.28 0.20405 0.20073 0.201 0.26703 0.2656 RANDOM 44.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.19 -0.37 0.15 1.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.781 r_dihedral_angle_3_deg 21.193 r_dihedral_angle_4_deg 18.987 r_dihedral_angle_1_deg 6.279 r_scangle_it 1.811 r_angle_refined_deg 1.359 r_scbond_it 1.089 r_mcangle_it 0.827 r_mcbond_it 0.462 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.781 r_dihedral_angle_3_deg 21.193 r_dihedral_angle_4_deg 18.987 r_dihedral_angle_1_deg 6.279 r_scangle_it 1.811 r_angle_refined_deg 1.359 r_scbond_it 1.089 r_mcangle_it 0.827 r_mcbond_it 0.462 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.156 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.098 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26382 Nucleic Acid Atoms Solvent Atoms 116 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement MAR345 data collection DENZO data reduction SCALEPACK data scaling REFMAC phasing