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Crystal structure of aldehyde dehydrogenase from brucella melitensis biovar abortus 2308
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OPX pdb entry 2opx, modified
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 PROPLEX-96 F9: 1.0M AMMONIUM SULPHATE, 100MM MES PH 6.5, VAPOR DIFFUSION, TEMPERATURE 298K, pH 6.50, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.54 51.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.87 α = 92.03 b = 93.01 β = 107.58 c = 143.7 γ = 109.65
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.9999 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 94 0.061 0.061 11.02 1.81 246609 231828 -3 30.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.15 92.5 0.354 0.354 2.3 1.71 16866
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR, MR THROUGHOUT pdb entry 2opx, modified 2.1 19.78 246609 231826 11634 94.2 0.164 0.164 0.161 0.1644 0.225 0.2241 RANDOM 19.83
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.97 0.39 -0.19 -0.16 -0.35 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.532 r_dihedral_angle_4_deg 16.63 r_dihedral_angle_3_deg 14.935 r_dihedral_angle_1_deg 6.11 r_scangle_it 4.181 r_scbond_it 2.613 r_angle_refined_deg 1.627 r_mcangle_it 1.432 r_angle_other_deg 0.967 r_mcbond_it 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.532 r_dihedral_angle_4_deg 16.63 r_dihedral_angle_3_deg 14.935 r_dihedral_angle_1_deg 6.11 r_scangle_it 4.181 r_scbond_it 2.613 r_angle_refined_deg 1.627 r_mcangle_it 1.432 r_angle_other_deg 0.967 r_mcbond_it 0.8 r_mcbond_other 0.225 r_chiral_restr 0.096 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 28921 Nucleic Acid Atoms Solvent Atoms 3142 Heterogen Atoms 136
Software Software Software Name Purpose BOS data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling