3NRZ

Crystal Structure of Bovine Xanthine Oxidase in Complex with Hypoxanthine


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1sitting batch7298PEG 8000, pH 7.0, sitting batch, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.4950.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 133.016α = 90
b = 73.645β = 97.05
c = 138.696γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDMAR CCD 165 mm2008-07-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.9793APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.823.595.12463932343672
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.84795.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.823.52463932343671184395.070.19860.19670.2344RANDOM23.8705
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.98-0.020.760.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.269
r_dihedral_angle_4_deg17.472
r_dihedral_angle_3_deg15.422
r_dihedral_angle_1_deg5.986
r_scangle_it3.666
r_scbond_it2.346
r_mcangle_it1.432
r_angle_refined_deg1.431
r_mcbond_it0.898
r_nbtor_refined0.304
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.269
r_dihedral_angle_4_deg17.472
r_dihedral_angle_3_deg15.422
r_dihedral_angle_1_deg5.986
r_scangle_it3.666
r_scbond_it2.346
r_mcangle_it1.432
r_angle_refined_deg1.431
r_mcbond_it0.898
r_nbtor_refined0.304
r_symmetry_hbond_refined0.278
r_symmetry_vdw_refined0.259
r_nbd_refined0.214
r_xyhbond_nbd_refined0.165
r_chiral_restr0.09
r_bond_refined_d0.012
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18881
Nucleic Acid Atoms
Solvent Atoms1274
Heterogen Atoms198

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing