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Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - WT/apo
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 16-20% PEG3350, 0.2M NH4Cl, 0.1M sodium cacodylate. Microseeded using parent crystals grown with the supplementation of 4% sucrose, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.4 48.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.23 α = 90 b = 122.7 β = 90 c = 132.66 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2006-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9785646 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 90.17 99.7 0.062 17.95 189118 -3 26.758
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.59 99.8 0.485 3.33
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 90.17 172070 8616 99.74 0.1718 0.1702 0.2019 0.2141 RANDOM 21.1938
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 -0.55 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.976 r_dihedral_angle_4_deg 17.357 r_dihedral_angle_3_deg 13.982 r_dihedral_angle_1_deg 6.437 r_scangle_it 4.733 r_scbond_it 3.123 r_mcangle_it 2.184 r_angle_refined_deg 2.122 r_mcbond_it 1.401 r_angle_other_deg 1.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.976 r_dihedral_angle_4_deg 17.357 r_dihedral_angle_3_deg 13.982 r_dihedral_angle_1_deg 6.437 r_scangle_it 4.733 r_scbond_it 3.123 r_mcangle_it 2.184 r_angle_refined_deg 2.122 r_mcbond_it 1.401 r_angle_other_deg 1.123 r_mcbond_other 0.469 r_chiral_restr 0.146 r_bond_refined_d 0.027 r_gen_planes_refined 0.013 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9452 Nucleic Acid Atoms Solvent Atoms 1039 Heterogen Atoms 7
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing