3SR6

Crystal Structure of Reduced Bovine Xanthine Oxidase in Complex with Arsenite


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1Sitting Batch7.2298PEG 8000, pH 7.2, Sitting Batch, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.4950.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 133.046α = 90
b = 73.236β = 96.8
c = 138.023γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDRAYONIX MX225HE2010-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID0.9793APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.122.195.8154300147820

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.122.1154300147820745195.810.22720.22490.2719RANDOM25.5581
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.84-0.020.352.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.34
r_dihedral_angle_4_deg18.613
r_dihedral_angle_3_deg16.815
r_dihedral_angle_1_deg6.606
r_scangle_it2.951
r_scbond_it1.837
r_angle_refined_deg1.509
r_mcangle_it1.165
r_mcbond_it0.725
r_symmetry_vdw_refined0.355
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.34
r_dihedral_angle_4_deg18.613
r_dihedral_angle_3_deg16.815
r_dihedral_angle_1_deg6.606
r_scangle_it2.951
r_scbond_it1.837
r_angle_refined_deg1.509
r_mcangle_it1.165
r_mcbond_it0.725
r_symmetry_vdw_refined0.355
r_nbtor_refined0.303
r_nbd_refined0.21
r_symmetry_hbond_refined0.178
r_xyhbond_nbd_refined0.172
r_chiral_restr0.095
r_bond_refined_d0.014
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18810
Nucleic Acid Atoms
Solvent Atoms842
Heterogen Atoms182

Software

Software
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction