3ZST

GlgE isoform 1 from Streptomyces coelicolor with alpha-cyclodextrin bound


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherSEMET DERIVATIVE MODEL SOLVED BY MAD

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17pH 7.0
Crystal Properties
Matthews coefficientSolvent content
3.2562.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 113.24α = 90
b = 113.24β = 90
c = 314.5γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2010-01-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I02DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.371.3593.70.0923.614.385772-933.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.42660.337.913.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)R-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTSEMET DERIVATIVE MODEL SOLVED BY MAD2.3106.5481357430193.40.174010.172570.180.201320.21RANDOM48.3
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.081.08-2.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.051
r_dihedral_angle_4_deg17.183
r_dihedral_angle_3_deg13.877
r_dihedral_angle_1_deg6.011
r_angle_refined_deg1.529
r_angle_other_deg1.13
r_chiral_restr0.089
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10239
Nucleic Acid Atoms
Solvent Atoms731
Heterogen Atoms136

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
SHELXphasing
PHASERphasing
REFMACrefinement