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Complex of HSP90 ATPase domain with tropane derived inhibitors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other IN-HOUSE APO STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.58 51.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.656 α = 70.87 b = 57.363 β = 87.86 c = 57.442 γ = 68.95
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93.2 CCD MARRESEARCH 2007-07-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 41.51 94.6 0.14 11.6 1.98 52156 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.9 94.4 0.53 1.69 1.99
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IN-HOUSE APO STRUCTURE 1.7 54.07 49527 2628 94.7 0.21504 0.21303 0.25111 0.2432 RANDOM 28.256
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 0.69 0.95 -0.52 -0.27 0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.995 r_dihedral_angle_4_deg 22.924 r_dihedral_angle_3_deg 15.024 r_dihedral_angle_1_deg 6.233 r_scangle_it 4.138 r_scbond_it 2.895 r_mcangle_it 1.935 r_angle_refined_deg 1.875 r_mcbond_it 1.328 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.995 r_dihedral_angle_4_deg 22.924 r_dihedral_angle_3_deg 15.024 r_dihedral_angle_1_deg 6.233 r_scangle_it 4.138 r_scbond_it 2.895 r_mcangle_it 1.935 r_angle_refined_deg 1.875 r_mcbond_it 1.328 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.225 r_chiral_restr 0.221 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.136 r_xyhbond_nbd_refined 0.133 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3233 Nucleic Acid Atoms Solvent Atoms 272 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing