X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP82931.6 M ammonium sulfate, 0.1 M Tris-HCl, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.6553.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.376α = 90
b = 108.376β = 90
c = 101.205γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray200CCDADSC QUANTUM 3152013-07-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-E0.9792APS24-ID-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.435099.5158521577322
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.432.57100

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.4344.58158521577384499.390.183980.182670.20851RANDOM60.849
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.350.350.35-1.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.587
r_sphericity_bonded25.044
r_dihedral_angle_4_deg24.488
r_dihedral_angle_3_deg20.997
r_rigid_bond_restr14.648
r_long_range_B_refined14.349
r_long_range_B_other14.348
r_mcangle_other13.94
r_scangle_other13.762
r_mcangle_it13.761
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.587
r_sphericity_bonded25.044
r_dihedral_angle_4_deg24.488
r_dihedral_angle_3_deg20.997
r_rigid_bond_restr14.648
r_long_range_B_refined14.349
r_long_range_B_other14.348
r_mcangle_other13.94
r_scangle_other13.762
r_mcangle_it13.761
r_scbond_other12.606
r_scbond_it12.367
r_mcbond_it12.004
r_mcbond_other11.966
r_sphericity_free10.46
r_dihedral_angle_1_deg6.982
r_angle_other_deg3.537
r_angle_refined_deg1.789
r_chiral_restr0.095
r_bond_refined_d0.015
r_gen_planes_other0.007
r_gen_planes_refined0.006
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2838
Nucleic Acid Atoms
Solvent Atoms32
Heterogen Atoms42

Software

Software
Software NamePurpose
CBASSdata collection
PHASERphasing
REFMACrefinement
RAPDdata reduction
RAPDdata scaling