X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2QUL 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.72930.1M MES, 10% w/v PEG 4000
Crystal Properties
Matthews coefficientSolvent content
2.2244.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.81α = 90
b = 47.44β = 102.49
c = 126.38γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M-F2013-12-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA1.0000SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.136.8599.10.10712.16.269460
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1598.40.4713.75.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2QUL2.136.8569447350698.70.1520.181RANDOM15.65
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.59-1.52-0.291.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.411
r_dihedral_angle_4_deg17.16
r_dihedral_angle_3_deg13.932
r_dihedral_angle_1_deg6.345
r_angle_refined_deg1.398
r_angle_other_deg1.041
r_chiral_restr0.083
r_gen_planes_refined0.012
r_bond_refined_d0.011
r_gen_planes_other0.008
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.411
r_dihedral_angle_4_deg17.16
r_dihedral_angle_3_deg13.932
r_dihedral_angle_1_deg6.345
r_angle_refined_deg1.398
r_angle_other_deg1.041
r_chiral_restr0.083
r_gen_planes_refined0.012
r_bond_refined_d0.011
r_gen_planes_other0.008
r_bond_other_d0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9334
Nucleic Acid Atoms
Solvent Atoms367
Heterogen Atoms161

Software

Software
Software NamePurpose
Cootmodel building
MOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing