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Crystal structure of FraC with lipids
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3VWI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 7 293 Jeffamine M600, 1,2,3-heptanetriol, monoolein, ammonium sulfate, HEPES
Crystal Properties Matthews coefficient Solvent content 5.4 77.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.337 α = 90 b = 199.879 β = 90 c = 120.58 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2014-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.000 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.14 38.65 94.6 0.15 9.9 7.3 30154 42.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.14 3.32 83.5 0.41 3.4 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3VWI 3.14 38.65 28628 1526 93.77 0.19967 0.19852 0.2033 0.22123 0.2215 RANDOM 52.754
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 2.83 -2.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.621 r_dihedral_angle_4_deg 21.503 r_dihedral_angle_3_deg 16.116 r_dihedral_angle_1_deg 6.684 r_long_range_B_refined 5.148 r_long_range_B_other 5.148 r_scangle_other 3.115 r_mcangle_it 2.198 r_mcangle_other 2.197 r_scbond_it 1.977
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.621 r_dihedral_angle_4_deg 21.503 r_dihedral_angle_3_deg 16.116 r_dihedral_angle_1_deg 6.684 r_long_range_B_refined 5.148 r_long_range_B_other 5.148 r_scangle_other 3.115 r_mcangle_it 2.198 r_mcangle_other 2.197 r_scbond_it 1.977 r_scbond_other 1.977 r_angle_refined_deg 1.698 r_angle_other_deg 1.665 r_mcbond_it 1.341 r_mcbond_other 1.341 r_chiral_restr 0.085 r_bond_refined_d 0.013 r_bond_other_d 0.01 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5504 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 461
Software Software Software Name Purpose REFMAC refinement