4WPZ

Crystal structure of cytochrome P450 CYP107W1 from Streptomyces avermitilis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP287KBr, PEG 2000
Crystal Properties
Matthews coefficientSolvent content
2.9658.47

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.877α = 90
b = 114.877β = 90
c = 79.049γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rmirror2013-05-09MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 5C (4A)0.96418PAL/PLS5C (4A)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15099.1406.731242

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.135.5429396157599.170.18150.17830.2402RANDOM27.527
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.289
r_dihedral_angle_4_deg18.279
r_dihedral_angle_3_deg17.05
r_dihedral_angle_1_deg6.076
r_mcangle_it3.514
r_mcbond_it2.448
r_mcbond_other2.444
r_angle_refined_deg2.194
r_angle_other_deg1.013
r_chiral_restr0.144
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.289
r_dihedral_angle_4_deg18.279
r_dihedral_angle_3_deg17.05
r_dihedral_angle_1_deg6.076
r_mcangle_it3.514
r_mcbond_it2.448
r_mcbond_other2.444
r_angle_refined_deg2.194
r_angle_other_deg1.013
r_chiral_restr0.144
r_bond_refined_d0.019
r_gen_planes_refined0.011
r_gen_planes_other0.009
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2982
Nucleic Acid Atoms
Solvent Atoms306
Heterogen Atoms45

Software

Software
Software NamePurpose
SCALEPACKdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction