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C. bescii Family 3 pectate lyase double mutant K108A in complex with trigalacturonic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Tris pH 7.7 and 53% MPD
Crystal Properties Matthews coefficient Solvent content 2.08 40.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.872 α = 90 b = 36.361 β = 132.44 c = 99.555 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 2014-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 99.8 15.6 9.51 72222
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.5 99.1 2.31 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.4 50 67596 3493 98.1 0.12531 0.12231 0.1218 0.18442 0.1841 RANDOM 16.853
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.04 -0.32 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.91 r_dihedral_angle_4_deg 30.186 r_sphericity_free 16.902 r_sphericity_bonded 13.536 r_dihedral_angle_3_deg 12.256 r_dihedral_angle_1_deg 6.825 r_rigid_bond_restr 5.887 r_long_range_B_refined 5.071 r_scangle_other 4.903 r_scbond_it 4.651
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.91 r_dihedral_angle_4_deg 30.186 r_sphericity_free 16.902 r_sphericity_bonded 13.536 r_dihedral_angle_3_deg 12.256 r_dihedral_angle_1_deg 6.825 r_rigid_bond_restr 5.887 r_long_range_B_refined 5.071 r_scangle_other 4.903 r_scbond_it 4.651 r_scbond_other 4.651 r_long_range_B_other 4.387 r_mcangle_it 2.809 r_mcangle_other 2.809 r_mcbond_other 2.293 r_mcbond_it 2.292 r_angle_refined_deg 2.021 r_angle_other_deg 0.891 r_chiral_restr 0.126 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2953 Nucleic Acid Atoms Solvent Atoms 576 Heterogen Atoms 151
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data reduction PROTEUM PLUS data scaling MOLREP phasing